<?xml version='1.0' encoding='UTF-8'?>
<project xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://maven.apache.org/POM/4.0.0">
    <modelVersion>4.0.0</modelVersion>
    <groupId>org.hammerlab.adam</groupId>
    <artifactId>core_2.11</artifactId>
    <packaging>jar</packaging>
    <description>core</description>
    <version>0.21.2</version>
    <name>core</name>
    <organization>
        <name>org.hammerlab.adam</name>
    </organization>
    <url> https://github.com/hammerlab/core </url>
    <licenses>
        <license>
            <name>Apache License</name>
            <url>https://raw.github.com/hammerlab/core/master/LICENSE</url>
            <distribution>repo</distribution>
        </license>
    </licenses>
    <scm>
        <url>git@github.com:hammerlab/core.git</url>
        <connection>scm:git:git@github.com:hammerlab/core.git</connection>
        <developerConnection>scm:git:git@github.com:hammerlab/core.git</developerConnection>
    </scm>
    <developers>
        <developer>
            <id>hammerlab</id>
            <name>Hammer Lab</name>
            <url>https://github.com/hammerlab</url>
        </developer>
    </developers>
    <dependencies>
        <dependency>
            <groupId>org.scala-lang</groupId>
            <artifactId>scala-library</artifactId>
            <version>2.11.8</version>
            <exclusions>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.apache.spark</groupId>
            <artifactId>spark-core_2.11</artifactId>
            <version>2.1.0</version>
            <scope>provided</scope>
            <exclusions>
                <exclusion>
                    <groupId>org.scalatest</groupId>
                    <artifactId>scalatest_2.11</artifactId>
                </exclusion>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.apache.hadoop</groupId>
            <artifactId>hadoop-client</artifactId>
            <version>2.7.3</version>
            <scope>provided</scope>
            <exclusions>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.bdgenomics.bdg-formats</groupId>
            <artifactId>bdg-formats</artifactId>
            <version>0.10.1</version>
            <exclusions>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.bdgenomics.utils</groupId>
            <artifactId>utils-cli_2.11</artifactId>
            <version>0.2.11</version>
            <exclusions>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.bdgenomics.utils</groupId>
            <artifactId>utils-intervalrdd_2.11</artifactId>
            <version>0.2.11</version>
            <exclusions>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.bdgenomics.utils</groupId>
            <artifactId>utils-io_2.11</artifactId>
            <version>0.2.11</version>
            <exclusions>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.bdgenomics.utils</groupId>
            <artifactId>utils-metrics_2.11</artifactId>
            <version>0.2.11</version>
            <exclusions>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.bdgenomics.utils</groupId>
            <artifactId>utils-misc_2.11</artifactId>
            <version>0.2.11</version>
            <exclusions>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.bdgenomics.utils</groupId>
            <artifactId>utils-misc_2.11</artifactId>
            <version>0.2.11</version>
            <scope>test</scope>
            <classifier>tests</classifier>
            <exclusions>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>commons-io</groupId>
            <artifactId>commons-io</artifactId>
            <version>2.4</version>
            <exclusions>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.seqdoop</groupId>
            <artifactId>hadoop-bam</artifactId>
            <version>7.7.1</version>
            <exclusions>
                <exclusion>
                    <groupId>org.apache.hadoop</groupId>
                    <artifactId>hadoop-client</artifactId>
                </exclusion>
                <exclusion>
                    <groupId>com.github.samtools</groupId>
                    <artifactId>htsjdk</artifactId>
                </exclusion>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.hammerlab.genomics</groupId>
            <artifactId>loci_2.11</artifactId>
            <version>1.5.3</version>
            <exclusions>
                <exclusion>
                    <groupId>com.github.samtools</groupId>
                    <artifactId>htsjdk</artifactId>
                </exclusion>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.slf4j</groupId>
            <artifactId>slf4j-log4j12</artifactId>
            <version>1.7.21</version>
            <exclusions>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>com.github.samtools</groupId>
            <artifactId>htsjdk</artifactId>
            <version>2.5.0</version>
            <exclusions>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>com.netflix.servo</groupId>
            <artifactId>servo-core</artifactId>
            <version>0.10.0</version>
            <exclusions>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>it.unimi.dsi</groupId>
            <artifactId>fastutil</artifactId>
            <version>6.6.5</version>
            <exclusions>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.apache.avro</groupId>
            <artifactId>avro</artifactId>
            <version>1.8.0</version>
            <exclusions>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.apache.httpcomponents</groupId>
            <artifactId>httpclient</artifactId>
            <version>4.5.2</version>
            <exclusions>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.apache.parquet</groupId>
            <artifactId>parquet-avro</artifactId>
            <version>1.8.1</version>
            <exclusions>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.apache.parquet</groupId>
            <artifactId>parquet-scala_2.10</artifactId>
            <version>1.8.1</version>
            <exclusions>
                <exclusion>
                    <groupId>org.scala-lang</groupId>
                    <artifactId>scala-library</artifactId>
                </exclusion>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.hammerlab</groupId>
            <artifactId>test-utils_2.11</artifactId>
            <version>1.2.0</version>
            <scope>test</scope>
            <exclusions>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.scalatest</groupId>
            <artifactId>scalatest_2.11</artifactId>
            <version>3.0.0</version>
            <scope>test</scope>
            <exclusions>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.hammerlab</groupId>
            <artifactId>spark-tests_2.11</artifactId>
            <version>1.3.3</version>
            <scope>test</scope>
            <exclusions>
                <exclusion>
                    <groupId>org.apache.hadoop</groupId>
                    <artifactId>hadoop-client</artifactId>
                </exclusion>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.mockito</groupId>
            <artifactId>mockito-core</artifactId>
            <version>1.10.19</version>
            <scope>test</scope>
            <exclusions>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.hammerlab.genomics</groupId>
            <artifactId>reference_2.11</artifactId>
            <version>1.2.2</version>
            <scope>test</scope>
            <classifier>tests</classifier>
            <exclusions>
                <exclusion>
                    <groupId>com.github.samtools</groupId>
                    <artifactId>htsjdk</artifactId>
                </exclusion>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.hammerlab.genomics</groupId>
            <artifactId>reference_2.11</artifactId>
            <version>1.2.2</version>
            <exclusions>
                <exclusion>
                    <groupId>com.github.samtools</groupId>
                    <artifactId>htsjdk</artifactId>
                </exclusion>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>com.esotericsoftware.kryo</groupId>
            <artifactId>kryo</artifactId>
            <version>2.24.0</version>
            <exclusions>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
    </dependencies>
</project>