<?xml version="1.0" encoding="UTF-8"?>
<project xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xmlns="http://maven.apache.org/POM/4.0.0"
         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>
    <parent>
        <groupId>org.campagnelab.dl</groupId>
        <artifactId>variation-analysis</artifactId>
        <version>1.3.2</version>
    </parent>

    <artifactId>framework</artifactId>
    <packaging>jar</packaging>
    <properties>

        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
        <shadedClassifier>bin</shadedClassifier>


        <!-- protobuf paths -->
        <protobuf.input.directory>${project.basedir}/protobuf</protobuf.input.directory>
        <protobuf.output.directory>${project.build.directory}/generated-sources</protobuf.output.directory>

        <!-- library versions -->
        <build-helper-maven-plugin.version>1.9.1</build-helper-maven-plugin.version>
        <maven-antrun-plugin.version>1.8</maven-antrun-plugin.version>
        <maven-dependency-plugin.version>2.10</maven-dependency-plugin.version>
        <maven-shade-plugin.version>2.4.2</maven-shade-plugin.version>
        <os-maven-plugin.version>1.5.0.Final</os-maven-plugin.version>
        <protobuf.version>3.0.0-beta-4</protobuf.version>
        <parquet.project.version>1.8.1</parquet.project.version>
        <log4j.configuration>file:${basedir}/config/logback.xml</log4j.configuration>

    </properties>

    <profiles>
        <profile>
            <id>CPU</id>
            <activation>
                <activeByDefault>true</activeByDefault>
            </activation>
            <dependencies>
                <dependency>
                    <groupId>org.nd4j</groupId>
                    <artifactId>nd4j-native-platform</artifactId>
                    <version>${nd4j.version}</version>
                </dependency>
            </dependencies>
        </profile>
        <profile>
            <id>GPU</id>
            <activation>
                <activeByDefault>false</activeByDefault>
            </activation>
            <dependencies>
                <dependency>
                    <groupId>org.campagnelab.dl</groupId>
                    <artifactId>gpus</artifactId>
                    <version>${project.version}</version>
                    <optional>true</optional>
                    <scope>runtime</scope>
                </dependency>
                <dependency>
                    <groupId>org.deeplearning4j</groupId>
                    <artifactId>deeplearning4j-cuda-8.0</artifactId>
                    <version>${dl4j.version}</version>
                </dependency>
            </dependencies>
        </profile>
    </profiles>
    <build>
        <extensions>
            <!-- provides os.detected.classifier (i.e. linux-x86_64, osx-x86_64) property -->
            <extension>
                <groupId>kr.motd.maven</groupId>
                <artifactId>os-maven-plugin</artifactId>
                <version>${os-maven-plugin.version}</version>
            </extension>
        </extensions>
        <plugins>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-source-plugin</artifactId>
                <version>3.0.1</version>
                <executions>
                    <execution>
                        <id>attach-sources</id>
                        <phase>package</phase>
                        <goals>
                            <goal>jar</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-javadoc-plugin</artifactId>
                <version>2.10.4</version>
                <executions>
                    <execution>
                        <id>attach-javadocs</id>
                        <phase>package</phase>
                        <goals>
                            <goal>jar</goal>
                        </goals>
                        <configuration>
                            <additionalparam>-Xdoclint:none</additionalparam>
                        </configuration>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-compiler-plugin</artifactId>
                <!-- do not use another version, see http://stackoverflow.com/questions/11051620/compiling-only-selected-files-in-maven-->
                <version>2.1</version>
                <configuration>
                    <source>${java.version}</source>
                    <target>${java.version}</target>
                </configuration>
            </plugin>
        </plugins>
    </build>

    <dependencyManagement>
        <dependencies>
            <dependency>
                <groupId>org.nd4j</groupId>
                <artifactId>nd4j-native-platform</artifactId>
                <version>${nd4j.version}</version>
            </dependency>
            <dependency>
                <groupId>org.nd4j</groupId>
                <artifactId>nd4j-cuda-8.0-platform</artifactId>
                <version>${nd4j.version}</version>
            </dependency>
        </dependencies>
    </dependencyManagement>
    <dependencies>

        <dependency>
            <groupId>it.unimi.dsi</groupId>
            <artifactId>fastutil</artifactId>
            <version>7.0.12</version>
        </dependency>

        <!-- Deeplearning4j: -->
        <!-- ND4J backend. You need one in every DL4J project. Normally define artifactId as either "nd4j-native-platform" or "nd4j-cuda-7.5-platform" -->
        <dependency>
            <groupId>org.nd4j</groupId>
            <artifactId>${nd4j.backend}</artifactId>
            <version>${nd4j.version}</version>
            <optional>true</optional>
        </dependency>
        <!-- Core DL4J functionality -->
        <dependency>
            <groupId>org.deeplearning4j</groupId>
            <artifactId>deeplearning4j-core</artifactId>
            <version>${dl4j.version}</version>
        </dependency>

        <dependency>
            <groupId>org.deeplearning4j</groupId>
            <artifactId>deeplearning4j-nlp</artifactId>
            <version>${dl4j.version}</version>
        </dependency>

        <!-- deeplearning4j-ui is used for HistogramIterationListener + visualization: see http://deeplearning4j.org/visualization -->


        <!-- Force guava versions for using UI/HistogramIterationListener -->
        <dependency>
            <groupId>com.google.guava</groupId>
            <artifactId>guava</artifactId>
            <version>${guava.version}</version>
        </dependency>

        <dependency>
            <groupId>junit</groupId>
            <artifactId>junit</artifactId>
            <version>4.12</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>commons-io</groupId>
            <artifactId>commons-io</artifactId>
            <version>${commonsio.version}</version>
        </dependency>

        <dependency>
            <groupId>ch.qos.logback</groupId>
            <artifactId>logback-classic</artifactId>
            <version>1.0.13</version>
        </dependency>
        <dependency>
            <groupId>ch.qos.logback</groupId>
            <artifactId>logback-core</artifactId>
            <version>1.0.13</version>
        </dependency>
        <dependency>
            <groupId>com.google.protobuf</groupId>
            <artifactId>protobuf-java</artifactId>
            <version>${protobuf.version}</version>
        </dependency>
        <dependency>
            <groupId>it.unimi.dsi</groupId>
            <artifactId>dsiutils</artifactId>
            <version>2.3.3</version>
        </dependency>
        <dependency>
            <groupId>com.beust</groupId>
            <artifactId>jcommander</artifactId>
            <version>1.48</version>
        </dependency>
        <dependency>
            <groupId>org.apache.uima</groupId>
            <artifactId>uimaj-core</artifactId>
            <version>2.9.0</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.apache.commons</groupId>
            <artifactId>commons-math3</artifactId>
            <version>3.6.1</version>
        </dependency>
        <dependency>
            <groupId>org.deeplearning4j</groupId>
            <artifactId>deeplearning4j-ui_2.10</artifactId>
            <version>${dl4j.version}</version>
        </dependency>
        <dependency> <!--Uncomment when version is 0.7.2-->
            <groupId>org.deeplearning4j</groupId>
            <artifactId>deeplearning4j-parallel-wrapper_${scala.binary.version}</artifactId>
            <version>${dl4j.version}</version>
        </dependency>
    </dependencies>


</project>
